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Sample GSM1648514 Query DataSets for GSM1648514
Status Public on May 02, 2017
Title Uveal melanoma MEL_31 12040
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_31 12040_pval

Data table
ID_REF VALUE MEL_31 12040_pval
cg00050873 0.797584219079931 0.409374646229117
cg00212031 0 0.858200018873248
cg00213748 0.575515258636258 0.568653200185318
cg00214611 0 0.653007513418497
cg00455876 0.839769044643562 0.427950809996228
cg01707559 0.261771210818487 0.446688073700679
cg02004872 0.335023391314624 0
cg02011394 0.21835479625017 0.34221557387435
cg02050847 0.997489895090197 0
cg02233190 0.185659043455199 3.21403917924457e-08
cg02494853 0.0149768328819959 0
cg02839557 0.438310187442637 0.458676806549341
cg02842889 0.118628375599779 0.0102093991629489
cg03052502 0.360860981379556 0.00966514578226096
cg03155755 0.705282128258935 0.254139515883184
cg03244189 0.287509302797082 0
cg03443143 0.520980322097715 0.759519067874368
cg03683899 0 1.50036077808391e-05
cg03695421 0.473216203619195 0.0256059520119593
cg03706273 0.28229397505222 0

Total number of rows: 485512

Table truncated, full table size 20604 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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