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Sample GSM1648510 Query DataSets for GSM1648510
Status Public on May 02, 2017
Title Uveal melanoma MEL_27 12036
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_27 12036_pval

Data table
ID_REF VALUE MEL_27 12036_pval
cg00050873 0.918990796658277 0.272178122797517
cg00212031 0 0.997317679819835
cg00213748 0 0.98989905119308
cg00214611 0 0.996020450160414
cg00455876 0.0794822800173721 0.787257917692346
cg01707559 0.0200228510825844 0.0318088542321774
cg02004872 0.169375426683306 0
cg02011394 0.789243779184131 0.0174381794472008
cg02050847 0.379237021407249 0.752887844481091
cg02233190 0 0.00242784482330072
cg02494853 0.0256800405725956 0
cg02839557 0 0.992512529560698
cg02842889 0 0
cg03052502 0.726750788743037 0.902302169517047
cg03155755 0.815809203131718 0.860372756982362
cg03244189 0.230301496899387 8.88178419700125e-15
cg03443143 0.755641480064197 0.453655899064796
cg03683899 0 0
cg03695421 0 0.0022935507065841
cg03706273 0.00546053293188094 0

Total number of rows: 485512

Table truncated, full table size 16389 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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