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Sample GSM1648509 Query DataSets for GSM1648509
Status Public on May 02, 2017
Title Uveal melanoma MEL_26 12035
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_26 12035_pval

Data table
ID_REF VALUE MEL_26 12035_pval
cg00050873 0.962245785424379 0.148026168299988
cg00212031 0 0.98860220341522
cg00213748 0 0.983052805197581
cg00214611 0 0.989749033539184
cg00455876 0.730970840016603 0.936428725990105
cg01707559 0.0523820792421895 5.52613510507172e-12
cg02004872 0.143815032511682 0
cg02011394 0.972481755019967 0
cg02050847 0.332970426307073 0.86443955248796
cg02233190 0.137622121347669 4.36780999968356e-06
cg02494853 0.151897516947572 0
cg02839557 0 0.120499069845485
cg02842889 0.337999633892294 0.747171673549038
cg03052502 0.963729483813405 0.0653320360239479
cg03155755 0.911516374815291 0.632034034588155
cg03244189 0.23123287034691 0
cg03443143 0.96029684693313 0.0964920205676241
cg03683899 0 0.814970464344313
cg03695421 0.267976978278293 0.415664619368516
cg03706273 0.00326503188178681 0

Total number of rows: 485512

Table truncated, full table size 17469 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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