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Sample GSM1648500 Query DataSets for GSM1648500
Status Public on May 02, 2017
Title Uveal melanoma MEL_17 12026
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_17 12026_pval

Data table
ID_REF VALUE MEL_17 12026_pval
cg00050873 0.925962378264952 1.00599517605104e-09
cg00212031 0 0.802127561998325
cg00213748 0 0.987089233720302
cg00214611 0 0.90578822464456
cg00455876 0.136648849221284 0.630877948630392
cg01707559 0.176358353729316 0.00867718081505864
cg02004872 0.100625288059478 0
cg02011394 0.952083676357265 0
cg02050847 0.49360150543515 0.0573027257837494
cg02233190 0.109374478508013 2.96705215840909e-06
cg02494853 0.0186465444329553 0
cg02839557 0 0.982934226429749
cg02842889 0.10020359855038 0.209838998405066
cg03052502 0.855189311090148 0.00437954689614217
cg03155755 0.798996206487239 0.272929860319876
cg03244189 0.164303671716428 1.55431223447522e-15
cg03443143 0.927050613052505 7.58672447087605e-09
cg03683899 0.0979012130977884 0.21684554386624
cg03695421 0.128220612061777 7.66053886991358e-15
cg03706273 0.00585368031001195 0

Total number of rows: 485512

Table truncated, full table size 14711 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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