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Sample GSM1632182 Query DataSets for GSM1632182
Status Public on Sep 02, 2015
Title VCU-EP25.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: NA
age (yrs): 14
molecular subgroup: Grade II
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_VCU-EP25.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.487579
7896738 3.542841
7896740 3.731919
7896742 9.322449
7896744 7.99812
7896746 9.147976
7896748 9.064237
7896750 6.491382
7896752 10.82294
7896754 8.626816
7896756 7.057436
7896759 6.557686
7896761 6.218704
7896779 6.297753
7896798 6.009136
7896817 6.585487
7896822 7.608337
7896859 4.7804
7896861 3.830997
7896863 4.950492

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632182_HTHuGene11_070711K_MT286_VCU-EP25.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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