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Sample GSM1632176 Query DataSets for GSM1632176
Status Public on Sep 02, 2015
Title GER-2E9.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: female
age (yrs): 23
molecular subgroup: Grade II
histological grade: NA
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_GER-2E9.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.643418
7896738 4.022293
7896740 4.390819
7896742 9.620081
7896744 7.404401
7896746 9.449039
7896748 10.9438
7896750 8.38404
7896752 11.63787
7896754 7.949583
7896756 6.396035
7896759 6.85579
7896761 5.855011
7896779 5.891167
7896798 6.278949
7896817 6.757759
7896822 8.998039
7896859 4.697351
7896861 3.808511
7896863 5.127141

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632176_HTHuGene11_051211K_MT260_GER-2E9.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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