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Sample GSM1632174 Query DataSets for GSM1632174
Status Public on Sep 02, 2015
Title GER-1E2.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: female
age (yrs): 37
molecular subgroup: MPE
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_GER-1E2.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 7.440536
7896738 4.555545
7896740 4.842934
7896742 9.619833
7896744 7.753785
7896746 9.579017
7896748 10.60634
7896750 7.558908
7896752 11.50697
7896754 8.834004
7896756 6.32633
7896759 7.953667
7896761 5.59223
7896779 5.92426
7896798 5.941951
7896817 6.138143
7896822 7.937175
7896859 4.628368
7896861 3.934388
7896863 4.832509

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632174_HTHuGene11_051211K_MT258_GER-1E2.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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