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Sample GSM1632169 Query DataSets for GSM1632169
Status Public on Sep 02, 2015
Title CVTB2562.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: female
age (yrs): 43
molecular subgroup: MPE
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_CVTB2562.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 7.756769
7896738 5.220714
7896740 6.305058
7896742 10.553
7896744 9.08079
7896746 9.334021
7896748 11.06875
7896750 8.278578
7896752 11.71817
7896754 9.064837
7896756 6.260489
7896759 7.976366
7896761 5.584576
7896779 5.920772
7896798 6.326718
7896817 6.279059
7896822 8.33946
7896859 4.753825
7896861 3.94826
7896863 4.508586

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632169_HTHuGene11_051211K_MT253_CVTB2562.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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