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Sample GSM1632165 Query DataSets for GSM1632165
Status Public on Sep 02, 2015
Title CVTB2412.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: female
age (yrs): 19
molecular subgroup: MPE
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_CVTB2412.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.358725
7896738 4.258329
7896740 4.078421
7896742 9.210898
7896744 7.187118
7896746 8.987469
7896748 9.533259
7896750 6.866765
7896752 11.07835
7896754 8.391563
7896756 6.656055
7896759 7.654192
7896761 5.580888
7896779 5.964149
7896798 5.973922
7896817 6.274631
7896822 8.557722
7896859 4.614459
7896861 4.288267
7896863 5.191018

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632165_HTHuGene11_051211K_MT249_CVTB2412.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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