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Sample GSM1632163 Query DataSets for GSM1632163
Status Public on Sep 02, 2015
Title 37A55.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: female
age (yrs): 14
molecular subgroup: MPE
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_37A55.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.503539
7896738 3.795128
7896740 3.91735
7896742 9.914328
7896744 7.588808
7896746 8.872742
7896748 9.540798
7896750 6.967502
7896752 11.26541
7896754 8.60412
7896756 6.776854
7896759 8.145242
7896761 5.714158
7896779 6.149806
7896798 6.191715
7896817 6.205638
7896822 9.110052
7896859 5.027762
7896861 4.402231
7896863 4.837561

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632163_HTHuGene11_051211K_MT247_37A55.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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