NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1632160 Query DataSets for GSM1632160
Status Public on Sep 02, 2015
Title BTTB1074.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: male
age (yrs): 51
molecular subgroup: MPE
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_BTTB1074.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.133989
7896738 3.793509
7896740 4.572942
7896742 9.93274
7896744 7.416124
7896746 8.902981
7896748 10.28911
7896750 7.404151
7896752 11.41883
7896754 8.759727
7896756 6.191411
7896759 6.969694
7896761 5.878109
7896779 5.885353
7896798 6.0656
7896817 6.137148
7896822 8.561502
7896859 4.751184
7896861 4.001419
7896863 4.914575

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632160_HTHuGene11_051211K_MT244_BTTB1074.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap