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Sample GSM1632159 Query DataSets for GSM1632159
Status Public on Sep 02, 2015
Title CVTB2065.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: male
age (yrs): 53
molecular subgroup: Grade II
histological grade: 2
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_CVTB2065.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.753812
7896738 4.216123
7896740 4.145377
7896742 9.963861
7896744 8.326005
7896746 8.719666
7896748 9.941647
7896750 6.596493
7896752 11.02535
7896754 9.012728
7896756 6.90131
7896759 6.054229
7896761 5.972399
7896779 6.1621
7896798 6.213801
7896817 6.140942
7896822 7.602806
7896859 5.027646
7896861 4.381982
7896863 5.255872

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632159_HTHuGene11_051211K_MT243_CVTB2065.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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