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Sample GSM1632155 Query DataSets for GSM1632155
Status Public on Sep 02, 2015
Title CVTB2518.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: male
age (yrs): 65
molecular subgroup: Grade II
histological grade: 2
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_CVTB2518.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.226527
7896738 3.710009
7896740 3.919396
7896742 9.147816
7896744 7.058848
7896746 9.328943
7896748 9.579687
7896750 6.998359
7896752 10.93273
7896754 8.531474
7896756 6.882713
7896759 7.02714
7896761 5.806792
7896779 5.915651
7896798 5.92294
7896817 6.51387
7896822 7.649814
7896859 4.3602
7896861 3.691232
7896863 4.638779

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632155_HTHuGene11_050911K_MT239_CVTB2518.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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