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Sample GSM1632154 Query DataSets for GSM1632154
Status Public on Sep 02, 2015
Title CVTB2394.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: male
age (yrs): 24
molecular subgroup: Grade II
histological grade: NA
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_CVTB2394.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.488084
7896738 3.5858
7896740 3.947621
7896742 9.562735
7896744 7.192256
7896746 9.201448
7896748 9.926435
7896750 6.682044
7896752 10.75339
7896754 8.78615
7896756 8.181838
7896759 8.033991
7896761 6.087256
7896779 5.823743
7896798 6.196624
7896817 6.371872
7896822 7.258857
7896859 4.512789
7896861 3.889133
7896863 4.978484

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632154_HTHuGene11_050911K_MT238_CVTB2394.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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