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Sample GSM1632150 Query DataSets for GSM1632150
Status Public on Sep 02, 2015
Title CVTB2384.Primary-Spinal
Sample type RNA
 
Source name Primary Spinal Ependymoma
Organism Homo sapiens
Characteristics gender: male
age (yrs): 33
molecular subgroup: MPE
histological grade: 1
tissue: Spinal Cord
tissue subtype: Primary Spinal Ependymoma
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Trizol Method [PMID:21840481]
Label biotin
Label protocol According to manufacturers recommendations
 
Hybridization protocol According to manufacturers recommendations
Scan protocol According to manufacturers recommendations
Description GeneArray1-1_CVTB2384.rma-gene-default-Signal
Data processing Data was processed using Affymetrix Expression Console further analysis was performed in R(v.3.0)/Bioconductor(v.2.14) [PMID:21840481]
Data in the processed matrix has been processed using the RMA algorithm according to methods published previously [PMID:21840481]
 
Submission date Mar 11, 2015
Last update date Sep 02, 2015
Contact name Stephen Mack Christopher
E-mail(s) stevemack.work@gmail.com
Phone 2163182292
Organization name Baylor College of Medicine
Department Pediatrics
Lab Stephen Mack Lab
Street address 1102 Bates Avenue C1030.02
City Houston
State/province TX
ZIP/Postal code 770030
Country USA
 
Platform ID GPL11532
Series (1)
GSE66787 Spinal Ependymoma Gene Expression Data

Data table header descriptions
ID_REF
VALUE log2 RMA

Data table
ID_REF VALUE
7896736 6.098716
7896738 3.93063
7896740 3.880459
7896742 9.890882
7896744 7.157181
7896746 9.077948
7896748 10.15492
7896750 6.983522
7896752 10.87673
7896754 8.991184
7896756 7.128975
7896759 7.401693
7896761 6.051951
7896779 5.909775
7896798 6.125973
7896817 6.758304
7896822 8.657803
7896859 4.795227
7896861 4.022978
7896863 4.987288

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1632150_HTHuGene11_050911K_MT234_CVTB2384.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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