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Sample GSM1627010 Query DataSets for GSM1627010
Status Public on Sep 28, 2015
Title AG1BM4_2 (gene)
Sample type RNA
 
Source name Mixed RNA of both (1:4)
Organism Homo sapiens
Characteristics sample type: 1:4 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
 
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_2
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
 
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
E-mail(s) jyu@wustl.edu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL17586
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Relations
Alternative to GSM1627000 (exon-level analysis)

Data table header descriptions
ID_REF
VALUE Quantification

Data table
ID_REF VALUE
TC01000001.hg.1 8.20595
TC01000002.hg.1 6.87936
TC01000003.hg.1 6.19183
TC01000004.hg.1 7.18205
TC01000005.hg.1 10.9515
TC01000006.hg.1 12.6006
TC01000007.hg.1 13.1236
TC01000008.hg.1 8.75879
TC01000009.hg.1 3.93809
TC01000010.hg.1 6.2627
TC01000011.hg.1 8.055
TC01000012.hg.1 7.12045
TC01000013.hg.1 8.24749
TC01000014.hg.1 6.93372
TC01000015.hg.1 6.99093
TC01000016.hg.1 7.35836
TC01000017.hg.1 6.64572
TC01000018.hg.1 8.23068
TC01000019.hg.1 7.46715
TC01000020.hg.1 7.29583

Total number of rows: 70523

Table truncated, full table size 1655 Kbytes.




Supplementary file Size Download File type/resource
GSM1627010_22375.CEL.gz 25.6 Mb (ftp)(http) CEL
GSM1627010_22375.rma-gene-full.chp.gz 455.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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