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Sample GSM1627007 Query DataSets for GSM1627007
Status Public on Sep 28, 2015
Title AG1BM64_1 (gene)
Sample type RNA
Source name Mixed RNA of both (1:64)
Organism Homo sapiens
Characteristics sample type: 1:64 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL17586
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626997 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
TC01000001.hg.1 8.94122
TC01000002.hg.1 7.50497
TC01000003.hg.1 6.69198
TC01000004.hg.1 7.69902
TC01000005.hg.1 11.2964
TC01000006.hg.1 12.6098
TC01000007.hg.1 13.2521
TC01000008.hg.1 9.05981
TC01000009.hg.1 4.2847
TC01000010.hg.1 6.92214
TC01000011.hg.1 8.56257
TC01000012.hg.1 7.6101
TC01000013.hg.1 8.51543
TC01000014.hg.1 7.59165
TC01000015.hg.1 7.07632
TC01000016.hg.1 7.42962
TC01000017.hg.1 6.79574
TC01000018.hg.1 8.30095
TC01000019.hg.1 7.60246
TC01000020.hg.1 7.44173

Total number of rows: 70523

Table truncated, full table size 1655 Kbytes.

Supplementary file Size Download File type/resource
GSM1627007_22372.CEL.gz 24.1 Mb (ftp)(http) CEL
GSM1627007_22372.rma-gene-full.chp.gz 455.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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