GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1627006 Query DataSets for GSM1627006
Status Public on Sep 28, 2015
Title AG1BM16_1 (gene)
Sample type RNA
Source name Mixed RNA of both (1:16)
Organism Homo sapiens
Characteristics sample type: 1:16 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL17586
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626996 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
TC01000001.hg.1 8.73207
TC01000002.hg.1 7.2192
TC01000003.hg.1 6.58164
TC01000004.hg.1 7.607
TC01000005.hg.1 11.1863
TC01000006.hg.1 12.7141
TC01000007.hg.1 13.169
TC01000008.hg.1 8.97069
TC01000009.hg.1 3.87621
TC01000010.hg.1 6.43278
TC01000011.hg.1 8.36642
TC01000012.hg.1 7.48263
TC01000013.hg.1 8.49089
TC01000014.hg.1 7.3842
TC01000015.hg.1 7.06183
TC01000016.hg.1 7.47551
TC01000017.hg.1 6.5859
TC01000018.hg.1 8.25291
TC01000019.hg.1 7.51599
TC01000020.hg.1 7.43452

Total number of rows: 70523

Table truncated, full table size 1655 Kbytes.

Supplementary file Size Download File type/resource
GSM1627006_22371.CEL.gz 24.9 Mb (ftp)(http) CEL
GSM1627006_22371.rma-gene-full.chp.gz 455.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap