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Sample GSM1627005 Query DataSets for GSM1627005
Status Public on Sep 28, 2015
Title AG1BM4_1 (gene)
Sample type RNA
Source name Mixed RNA of both (1:4)
Organism Homo sapiens
Characteristics sample type: 1:4 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL17586
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626995 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
TC01000001.hg.1 8.23843
TC01000002.hg.1 6.75567
TC01000003.hg.1 6.12708
TC01000004.hg.1 7.29541
TC01000005.hg.1 10.9672
TC01000006.hg.1 12.5266
TC01000007.hg.1 13.1064
TC01000008.hg.1 8.74082
TC01000009.hg.1 4.07858
TC01000010.hg.1 6.21602
TC01000011.hg.1 8.10545
TC01000012.hg.1 7.16078
TC01000013.hg.1 8.30606
TC01000014.hg.1 7.11249
TC01000015.hg.1 6.92487
TC01000016.hg.1 7.34578
TC01000017.hg.1 6.37605
TC01000018.hg.1 8.20089
TC01000019.hg.1 7.38685
TC01000020.hg.1 7.25275

Total number of rows: 70523

Table truncated, full table size 1655 Kbytes.

Supplementary file Size Download File type/resource
GSM1627005_22370.CEL.gz 25.0 Mb (ftp)(http) CEL
GSM1627005_22370.rma-gene-full.chp.gz 455.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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