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Sample GSM1627004 Query DataSets for GSM1627004
Status Public on Sep 28, 2015
Title AGO_1 (gene)
Sample type RNA
Source name Original Agilent Human Universal Reference RNA
Organism Homo sapiens
Characteristics sample type: pure reference RNA (AGO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL17586
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626994 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
TC01000001.hg.1 6.88013
TC01000002.hg.1 6.10843
TC01000003.hg.1 4.25927
TC01000004.hg.1 5.20543
TC01000005.hg.1 9.86046
TC01000006.hg.1 12.1955
TC01000007.hg.1 12.4393
TC01000008.hg.1 7.88895
TC01000009.hg.1 3.61829
TC01000010.hg.1 5.37462
TC01000011.hg.1 7.58084
TC01000012.hg.1 6.2075
TC01000013.hg.1 7.56804
TC01000014.hg.1 4.72289
TC01000015.hg.1 6.90091
TC01000016.hg.1 6.8223
TC01000017.hg.1 6.32219
TC01000018.hg.1 8.04602
TC01000019.hg.1 7.25534
TC01000020.hg.1 7.34178

Total number of rows: 70523

Table truncated, full table size 1655 Kbytes.

Supplementary file Size Download File type/resource
GSM1627004_22369.CEL.gz 25.0 Mb (ftp)(http) CEL
GSM1627004_22369.rma-gene-full.chp.gz 456.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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