NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1627000 Query DataSets for GSM1627000
Status Public on Sep 28, 2015
Title AG1BM4_2 (exon)
Sample type RNA
 
Source name Mixed RNA of both (1:4)
Organism Homo sapiens
Characteristics sample type: 1:4 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
 
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_2
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
 
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
E-mail(s) jyu@wustl.edu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL17585
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Relations
Alternative to GSM1627010 (gene-level analysis)

Data table header descriptions
ID_REF
VALUE Quantification
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
JUC01000001.hg.1 7.89452 0.0016058
JUC01000002.hg.1 6.08833 0.0147035
JUC01000003.hg.1 9.08738 3.84656e-06
JUC01000004.hg.1 6.54285 0.00613891
JUC01000005.hg.1 8.69431 0.000119731
JUC01000006.hg.1 8.05883 0.00169818
JUC01000007.hg.1 5.47616 0.0550978
JUC01000008.hg.1 8.23162 6.86381e-06
JUC01000009.hg.1 3.68482 0.120779
JUC01000010.hg.1 3.70353 0.00537174
JUC01000011.hg.1 13.2922 4.90787e-09
JUC01000012.hg.1 9.08588 0.0013136
JUC01000013.hg.1 12.8847 4.63897e-09
JUC01000014.hg.1 10.514 4.49409e-09
JUC01000015.hg.1 7.88401 3.17902e-05
JUC01000016.hg.1 10.1242 1.11755e-06
JUC01000017.hg.1 7.83818 2.78778e-07
JUC01000018.hg.1 10.9914 1.01162e-05
JUC01000019.hg.1 10.0517 7.49706e-07
JUC01000020.hg.1 10.0517 7.49706e-07

Total number of rows: 914585

Table truncated, full table size 32503 Kbytes.




Supplementary file Size Download File type/resource
GSM1627000_22375.CEL.gz 25.6 Mb (ftp)(http) CEL
GSM1627000_22375.rma-alt-splice-dabg.chp.gz 9.3 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap