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Sample GSM1626999 Query DataSets for GSM1626999
Status Public on Sep 28, 2015
Title AGO_2 (exon)
Sample type RNA
Source name Original Agilent Human Universal Reference RNA
Organism Homo sapiens
Characteristics sample type: pure reference RNA (AGO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 100 ng of starting RNAs were amplified with Ambion WT-plus amplification kit and 5,000 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Transcriptome Arrays v2.0 (HTA2.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_2
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL17585
Series (2)
GSE66648 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_HTA2.0)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1627009 (gene-level analysis)

Data table header descriptions
VALUE Quantification

Data table
JUC01000001.hg.1 6.7794 0.0182187
JUC01000002.hg.1 4.82989 0.212647
JUC01000003.hg.1 8.20267 1.03882e-05
JUC01000004.hg.1 5.86704 0.0169579
JUC01000005.hg.1 8.09241 0.000306443
JUC01000006.hg.1 6.9511 0.0121394
JUC01000007.hg.1 5.71843 0.053041
JUC01000008.hg.1 6.79451 0.000266636
JUC01000009.hg.1 3.28746 0.33828
JUC01000010.hg.1 3.33993 0.0553045
JUC01000011.hg.1 12.7428 4.90787e-09
JUC01000012.hg.1 8.17179 0.0061491
JUC01000013.hg.1 12.5138 4.63897e-09
JUC01000014.hg.1 9.97498 4.49409e-09
JUC01000015.hg.1 6.99711 8.79148e-05
JUC01000016.hg.1 8.98827 2.23487e-06
JUC01000017.hg.1 7.742 2.23661e-08
JUC01000018.hg.1 8.47946 0.00374317
JUC01000019.hg.1 8.74922 2.58148e-05
JUC01000020.hg.1 8.74922 2.58148e-05

Total number of rows: 914585

Table truncated, full table size 32387 Kbytes.

Supplementary file Size Download File type/resource
GSM1626999_22374.CEL.gz 26.5 Mb (ftp)(http) CEL
GSM1626999_22374.rma-alt-splice-dabg.chp.gz 9.3 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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