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Sample GSM1626635 Query DataSets for GSM1626635
Status Public on Sep 28, 2015
Title AG1BM64_1 (gene)
Sample type RNA
Source name Mixed RNA of both (1:64)
Organism Homo sapiens
Characteristics sample type: 1:64 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 50 ng of starting RNAs were amplified with NuGEN Ovation PicoSL WTA V2 kit and 2,500 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Gene 1.0 ST Arrays (Gene1.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL6244
Series (2)
GSE66628 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_Gene1.0) (exon analysis)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626597 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
7892501 3.5765
7892502 4.29276
7892503 4.29964
7892504 9.79679
7892505 3.56055
7892506 1.70228
7892507 5.3888
7892508 3.38826
7892509 9.89979
7892510 2.60019
7892511 4.05038
7892512 6.80378
7892513 1.87451
7892514 9.86236
7892515 10.2799
7892516 5.84134
7892517 5.79899
7892518 2.87797
7892519 5.16258
7892520 10.2653

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1626635_23024.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM1626635_23024.rma-gene-default.chp.gz 255.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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