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Sample GSM1626627 Query DataSets for GSM1626627
Status Public on Sep 28, 2015
Title BMO_1 (gene)
Sample type RNA
Source name Original Bone Marrow RNA
Organism Homo sapiens
Characteristics sample type: pure bone marrow RNA (BMO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 50 ng of starting RNAs were amplified with NuGEN Ovation PicoSL WTA V2 kit and 2,500 ng of biotin-labeled cDNAs were hybridized.
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Gene 1.0 ST Arrays (Gene1.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL6244
Series (2)
GSE66628 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_Gene1.0) (exon analysis)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Alternative to GSM1626589 (exon-level analysis)

Data table header descriptions
VALUE Quantification

Data table
7892501 2.74441
7892502 4.08103
7892503 2.8496
7892504 9.88964
7892505 1.84341
7892506 1.43979
7892507 5.64767
7892508 3.12477
7892509 8.96535
7892510 2.85098
7892511 3.43006
7892512 6.79342
7892513 2.24716
7892514 9.64807
7892515 10.2979
7892516 5.74378
7892517 5.45379
7892518 1.4616
7892519 3.66913
7892520 9.99018

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.

Supplementary file Size Download File type/resource
GSM1626627_23016.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM1626627_23016.rma-gene-default.chp.gz 256.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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