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Sample GSM1626589 Query DataSets for GSM1626589
Status Public on Sep 28, 2015
Title BMO_1 (exon)
Sample type RNA
 
Source name Original Bone Marrow RNA
Organism Homo sapiens
Characteristics sample type: pure bone marrow RNA (BMO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol 50 ng of starting RNAs were amplified with NuGEN Ovation PicoSL WTA V2 kit and 2,500 ng of biotin-labeled cDNAs were hybridized.
 
Hybridization protocol Labeled cDNAs were hybridized onto Affymetrix Human Gene 1.0 ST Arrays (Gene1.0) following Affymetrix standard protocols.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix).
Description replicate_1
Data processing Raw data were processed with the Expression Console (Affymetrix) for background correction and normalization, and both probeset (exon) and gene (transcript cluster) level data were generated.
 
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
E-mail(s) jyu@wustl.edu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL10739
Series (2)
GSE66628 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Affymetrix_Gene1.0) (exon analysis)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology
Relations
Alternative to GSM1626627 (gene-level analysis)

Data table header descriptions
ID_REF
VALUE Quantification
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
7892501 2.74441 0.0914376
7892502 4.08103 0.000952026
7892503 2.8496 0.1546
7892504 9.88964 1.11569e-06
7892505 1.84341 0.0985023
7892506 1.43979 0.941905
7892507 5.64767 0.00146594
7892508 3.12477 0.00416346
7892509 8.96535 1.07024e-07
7892510 2.85098 0.056203
7892511 3.43006 0.00569477
7892512 6.79342 0.000174407
7892513 2.24716 0.0786437
7892514 9.64807 5.17436e-09
7892515 10.2979 4.55741e-09
7892516 5.74378 4.77904e-06
7892517 5.45379 0.00487721
7892518 1.4616 0.606405
7892519 3.66913 0.391699
7892520 9.99018 2.85503e-08

Total number of rows: 257430

Table truncated, full table size 6586 Kbytes.




Supplementary file Size Download File type/resource
GSM1626589_23016.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM1626589_23016.rma-exon-default-dabg.chp.gz 2.2 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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