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Sample GSM1626342 Query DataSets for GSM1626342
Status Public on Sep 28, 2015
Title BMO_rep3
Sample type RNA
Source name Original Bone Marrow RNA
Organism Homo sapiens
Characteristics sample type: pure bone marrow RNA (BMO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description rep3
Data processing The image-derived data were processed with Illumina GenomeStudio
Data values are background subtracted and quantile normalized in linear scale for Matrix normalized and are background retained and non-normalized in linear scale for Matrix non-normalized.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10558
Series (2)
GSE66614 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Illumina_HT12)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -4.84232 0.7636364
ILMN_2055271 11.60978 0.1298701
ILMN_1736007 -3.921292 0.7194805
ILMN_2383229 42.96005 0.003896104
ILMN_1806310 60.23374 0
ILMN_1779670 -2.923284 0.674026
ILMN_1653355 13.50347 0.1025974
ILMN_1717783 -12.87386 0.9909091
ILMN_1705025 -0.9446243 0.5636364
ILMN_1814316 1.338206 0.4493507
ILMN_2359168 3.249344 0.3584416
ILMN_1731507 -5.72714 0.8090909
ILMN_1787689 -4.587779 0.7506493
ILMN_3241953 7.054439 0.2246753
ILMN_1745607 -13.79267 0.9935065
ILMN_2136495 -6.182831 0.8441558
ILMN_1668111 -6.893464 0.8753247
ILMN_2295559 17.59304 0.05844156
ILMN_1735045 88.34306 0
ILMN_1680754 9.154503 0.1766234

Total number of rows: 47306

Table truncated, full table size 1405 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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