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Sample GSM1626341 Query DataSets for GSM1626341
Status Public on Sep 28, 2015
Title BMO_rep2
Sample type RNA
Source name Original Bone Marrow RNA
Organism Homo sapiens
Characteristics sample type: pure bone marrow RNA (BMO)
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description rep2
Data processing The image-derived data were processed with Illumina GenomeStudio
Data values are background subtracted and quantile normalized in linear scale for Matrix normalized and are background retained and non-normalized in linear scale for Matrix non-normalized.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10558
Series (2)
GSE66614 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Illumina_HT12)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 3.711228 0.3103896
ILMN_2055271 54.95849 0.001298701
ILMN_1736007 -3.471581 0.7025974
ILMN_2383229 43.5196 0.002597403
ILMN_1806310 30.64586 0.01558442
ILMN_1779670 -9.061244 0.9324675
ILMN_1653355 -7.718118 0.8974026
ILMN_1717783 -0.8747594 0.5675325
ILMN_1705025 -4.421044 0.7402598
ILMN_1814316 -2.741775 0.6649351
ILMN_2359168 3.351049 0.3233766
ILMN_1731507 -10.21277 0.9545454
ILMN_1787689 -4.718389 0.7597402
ILMN_3241953 -1.9249 0.6194805
ILMN_1745607 -10.92052 0.9610389
ILMN_2136495 -3.836473 0.7168831
ILMN_1668111 3.336929 0.3246753
ILMN_2295559 -0.2588911 0.5337662
ILMN_1735045 88.36237 0
ILMN_1680754 18.18858 0.05584415

Total number of rows: 47306

Table truncated, full table size 1419 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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