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Sample GSM1626333 Query DataSets for GSM1626333
Status Public on Sep 28, 2015
Title AG1BM4_rep1
Sample type RNA
Source name Mixed RNA of both (1:4)
Organism Homo sapiens
Characteristics sample type: 1:4 mixture of AGO and BMO
Extracted molecule total RNA
Extraction protocol Samples used in the study are commercially available RNAs derived from mixture of multiple cell lines and RNAs extracted from patient bone marrow specimens
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description rep1
Data processing The image-derived data were processed with Illumina GenomeStudio
Data values are background subtracted and quantile normalized in linear scale for Matrix normalized and are background retained and non-normalized in linear scale for Matrix non-normalized.
Submission date Mar 06, 2015
Last update date Sep 28, 2015
Contact name Jinsheng Yu
Organization name Washington University School of Medicine
Department Genetics
Lab GTAC Lab
Street address 660 S. Euclid Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10558
Series (2)
GSE66614 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology (Illumina_HT12)
GSE66649 Multi-platform assessment of transcriptional profiling technologies utilizing a precise probe mapping methodology

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 1.706608 0.3415585
ILMN_2055271 32.457 0.001298701
ILMN_1736007 2.645091 0.2883117
ILMN_2383229 65.92703 0
ILMN_1806310 81.07394 0
ILMN_1779670 5.087746 0.1844156
ILMN_1653355 -0.653533 0.4792208
ILMN_1717783 -9.337916 0.9337662
ILMN_1705025 1.918213 0.3285714
ILMN_1814316 7.943817 0.1090909
ILMN_2359168 -0.5885496 0.474026
ILMN_1731507 -7.751177 0.8818182
ILMN_1787689 -3.188591 0.6285715
ILMN_3241953 19.35202 0.006493506
ILMN_1745607 129.1811 0
ILMN_2136495 -2.941536 0.6103896
ILMN_1668111 -11.44285 0.974026
ILMN_2295559 -3.654649 0.6584415
ILMN_1735045 60.43269 0
ILMN_1680754 18.10359 0.01038961

Total number of rows: 47306

Table truncated, full table size 1405 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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