NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1621574 Query DataSets for GSM1621574
Status Public on May 11, 2016
Title wilms tissue 27
Sample type RNA
 
Source name wilms tissue 18
Organism Homo sapiens
Characteristics tissue: WT, diffuse anaplasia
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA including miRNAs was isolated using theQiagen miRNeasy Kit according to manufacturers recommendations. RNA concentration was measured using NanoDrop2000 (ThermoScientific). RNA integrity was measured using the PicoRNA kit (Agilent) on a Bioanalyzer2100.
Label Cy3
Label protocol The mRNA expression profile was determined using Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray according to the manufacturers recommendations
 
Hybridization protocol The mRNA expression profile was determined using Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray according to the manufacturers recommendations
Scan protocol Array┬┤s were scanned with the Agilent Scanner with default settings.
Data processing Raw expression values were extracted using the Feature Extraction Software and GeneSpring Software of Agilent. Data was quantil normalized.
 
Submission date Mar 02, 2015
Last update date Apr 23, 2018
Contact name Nicole Ludwig
E-mail(s) n.ludwig@mx.uni-saarland.de
Phone 004968411626269
Organization name Saarland University
Department Human Genetics
Street address Kirrberger Strasse
City Homburg
ZIP/Postal code 66421
Country Germany
 
Platform ID GPL17077
Series (1)
GSE66405 mRNA expression profiles in Wilms tumor subtypes
Relations
Reanalyzed by GSE113533

Data table header descriptions
ID_REF
VALUE quantil normalized intensity values for all samples in set

Data table
ID_REF VALUE
(+)E1A_r60_1 19.37467954
(+)E1A_r60_3 5.12706317
(+)E1A_r60_a104 5.511214362
(+)E1A_r60_a107 7.776704425
(+)E1A_r60_a135 11.40827479
(+)E1A_r60_a20 13.01441876
(+)E1A_r60_a22 14.76158473
(+)E1A_r60_a97 16.93732891
(+)E1A_r60_n11 18.58408229
(+)E1A_r60_n9 18.96909945
3xSLv1 5.073502023
A_19_P00315452 7.146037301
A_19_P00315459 6.804703217
A_19_P00315482 6.739339947
A_19_P00315492 5.392490421
A_19_P00315493 8.608484067
A_19_P00315502 5.305871944
A_19_P00315506 9.650304603
A_19_P00315518 5.339825372
A_19_P00315519 5.211428652

Total number of rows: 50739

Table truncated, full table size 1259 Kbytes.




Supplementary file Size Download File type/resource
GSM1621574_US11153896_253949426869_S01_GE1_1010_Sep10_1_1.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap