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Sample GSM1621564 Query DataSets for GSM1621564
Status Public on May 11, 2016
Title wilms tissue 17
Sample type RNA
 
Source name wilms tissue 38
Organism Homo sapiens
Characteristics tissue: blastemal WT
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA including miRNAs was isolated using theQiagen miRNeasy Kit according to manufacturers recommendations. RNA concentration was measured using NanoDrop2000 (ThermoScientific). RNA integrity was measured using the PicoRNA kit (Agilent) on a Bioanalyzer2100.
Label Cy3
Label protocol The mRNA expression profile was determined using Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray according to the manufacturers recommendations
 
Hybridization protocol The mRNA expression profile was determined using Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray according to the manufacturers recommendations
Scan protocol Array┬┤s were scanned with the Agilent Scanner with default settings.
Data processing Raw expression values were extracted using the Feature Extraction Software and GeneSpring Software of Agilent. Data was quantil normalized.
 
Submission date Mar 02, 2015
Last update date Apr 23, 2018
Contact name Nicole Ludwig
E-mail(s) n.ludwig@mx.uni-saarland.de
Phone 004968411626269
Organization name Saarland University
Department Human Genetics
Street address Kirrberger Strasse
City Homburg
ZIP/Postal code 66421
Country Germany
 
Platform ID GPL17077
Series (1)
GSE66405 mRNA expression profiles in Wilms tumor subtypes
Relations
Reanalyzed by GSE113533

Data table header descriptions
ID_REF
VALUE quantil normalized intensity values for all samples in set

Data table
ID_REF VALUE
(+)E1A_r60_1 18.36237144
(+)E1A_r60_3 5.249703829
(+)E1A_r60_a104 5.266335454
(+)E1A_r60_a107 6.254062109
(+)E1A_r60_a135 8.819090396
(+)E1A_r60_a20 10.01503482
(+)E1A_r60_a22 11.91984403
(+)E1A_r60_a97 14.07225896
(+)E1A_r60_n11 15.96403394
(+)E1A_r60_n9 16.93513632
3xSLv1 4.91604355
A_19_P00315452 5.884794072
A_19_P00315459 6.918020868
A_19_P00315482 8.904706894
A_19_P00315492 5.378530901
A_19_P00315493 8.424757482
A_19_P00315502 6.179516696
A_19_P00315506 8.304826856
A_19_P00315518 5.305466803
A_19_P00315519 4.995040695

Total number of rows: 50739

Table truncated, full table size 1259 Kbytes.




Supplementary file Size Download File type/resource
GSM1621564_US11153896_253949426867_S01_GE1_1010_Sep10_2_1.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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