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Sample GSM1611919 Query DataSets for GSM1611919
Status Public on Aug 13, 2020
Title 9345344071_J
Sample type RNA
 
Source name HT29 mock2 TNFa 2h -2
Organism Homo sapiens
Characteristics colon cancer cell line: HT29
treatment: 10ng/mL TNFa 2 hours
Treatment protocol Cells were treated with either vehicle or 10ng/mL TNFa for either 2 or 24 hours before RNA extraction
Extracted molecule total RNA
Extraction protocol RNA was extracted using EZNA Total RNA Kit I, from Omega
Label Cy3
Label protocol cRNA were prepared and labeled with Cy3 dye using Illumina TotalPrep-96RNA Amplification Kit and Illumina Whole-Genome Gene Expression Direct Hybridisation Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Array data were normalized and analyzed using R program, lumi and limma packages.
 
Submission date Feb 17, 2015
Last update date Aug 13, 2020
Contact name Cecilia Williams
E-mail(s) cecilia.williams@scilifelab.se, cwil@kth.se, cecilia.williams@ki.se
Organization name KTH Royal Institute of Technology
Department Protein Science
Lab SciLifeLab
Street address Tomtebodav 23
City Solna
ZIP/Postal code 171 21
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE65979 ERbeta modulation of NFkB pathway in colon cancer cell lines SW480 and HT29

Data table header descriptions
ID_REF
VALUE normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 14.43595431 0
ILMN_1343295 13.39632109 0
ILMN_1651199 5.781310935 0.774026
ILMN_1651209 5.811941674 0.5493507
ILMN_1651210 5.799138039 0.6428571
ILMN_1651221 5.847490706 0.3584416
ILMN_1651228 12.05777905 0
ILMN_1651229 7.087730407 0
ILMN_1651230 5.805492255 0.5857143
ILMN_1651232 6.272501112 0.01688312
ILMN_1651235 5.970356948 0.1090909
ILMN_1651236 5.848600992 0.3584416
ILMN_1651237 8.799336357 0
ILMN_1651238 5.772437854 0.8376623
ILMN_1651249 5.851780777 0.338961
ILMN_1651253 5.764866767 0.8974026
ILMN_1651254 10.2632473 0
ILMN_1651259 6.602851833 0.005194805
ILMN_1651260 5.741306424 0.9766234
ILMN_1651262 13.33563532 0

Total number of rows: 46752

Table truncated, full table size 1495 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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