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Sample GSM1611912 Query DataSets for GSM1611912
Status Public on Aug 13, 2020
Title 9345344071_C
Sample type RNA
 
Source name HT29 ERb2 vehicle 2h -1
Organism Homo sapiens
Characteristics colon cancer cell line: HT29 with stably expressed Erbeta gene
treatment: vehicle 2 hours
Treatment protocol Cells were treated with either vehicle or 10ng/mL TNFa for either 2 or 24 hours before RNA extraction
Extracted molecule total RNA
Extraction protocol RNA was extracted using EZNA Total RNA Kit I, from Omega
Label Cy3
Label protocol cRNA were prepared and labeled with Cy3 dye using Illumina TotalPrep-96RNA Amplification Kit and Illumina Whole-Genome Gene Expression Direct Hybridisation Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Array data were normalized and analyzed using R program, lumi and limma packages.
 
Submission date Feb 17, 2015
Last update date Aug 13, 2020
Contact name Cecilia Williams
E-mail(s) cecilia.williams@scilifelab.se, cwil@kth.se, cecilia.williams@ki.se
Organization name KTH Royal Institute of Technology
Department Protein Science
Lab SciLifeLab
Street address Tomtebodav 23
City Solna
ZIP/Postal code 171 21
Country Sweden
 
Platform ID GPL10558
Series (1)
GSE65979 ERbeta modulation of NFkB pathway in colon cancer cell lines SW480 and HT29

Data table header descriptions
ID_REF
VALUE normalized signal intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1343291 14.56417152 0
ILMN_1343295 13.40296254 0
ILMN_1651199 5.812379527 0.5246753
ILMN_1651209 6.131359324 0.02987013
ILMN_1651210 5.876285534 0.2597403
ILMN_1651221 5.921120605 0.161039
ILMN_1651228 11.65461319 0
ILMN_1651229 6.921010482 0
ILMN_1651230 5.807194435 0.561039
ILMN_1651232 6.155139243 0.02597403
ILMN_1651235 6.53652249 0.009090909
ILMN_1651236 5.916307417 0.1649351
ILMN_1651237 9.381824795 0
ILMN_1651238 5.763133161 0.8909091
ILMN_1651249 5.818982629 0.4831169
ILMN_1651253 5.833210475 0.4155844
ILMN_1651254 9.601000715 0
ILMN_1651259 7.080458445 0
ILMN_1651260 5.796857291 0.6272727
ILMN_1651262 13.32848914 0

Total number of rows: 46752

Table truncated, full table size 1500 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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