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Sample GSM1606975 Query DataSets for GSM1606975
Status Public on May 19, 2015
Title AOCS_178
Sample type genomic
Source name Fallopian Tube Cells
Organism Homo sapiens
Characteristics gender: Female
tissue: Fallopian Tube
cell type: normal
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.309366643
cg00000108 0.915583932
cg00000109 0.826124154
cg00000165 0.238603379
cg00000236 0.852221611
cg00000289 0.42821815
cg00000292 0.893720643
cg00000321 0.321420453
cg00000363 0.119331459
cg00000622 0.022202918
cg00000658 0.801899418
cg00000714 0.064215044
cg00000721 0.936905731
cg00000734 0.076866954
cg00000769 0.04129183
cg00000807 0.87005198
cg00000884 0.761286486
cg00000905 0.117835975
cg00000924 0.532694503
cg00000948 0.833340875

Total number of rows: 485005

Table truncated, full table size 10847 Kbytes.

Supplementary file Size Download File type/resource
GSM1606975_9445229167_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1606975_9445229167_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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