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Sample GSM1606974 Query DataSets for GSM1606974
Status Public on May 19, 2015
Title AOCS_177
Sample type genomic
Source name Fallopian Tube Cells
Organism Homo sapiens
Characteristics gender: Female
tissue: Fallopian Tube
cell type: normal
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.126413856
cg00000108 0.915208876
cg00000109 0.63865829
cg00000165 0.333407066
cg00000236 0.760198803
cg00000289 0.340089528
cg00000292 0.774786123
cg00000321 0.381552216
cg00000363 0.12161413
cg00000622 0.014726364
cg00000658 0.798306553
cg00000714 0.074591029
cg00000721 0.917919986
cg00000734 0.07551371
cg00000769 0.026356206
cg00000807 0.846386749
cg00000884 0.768786833
cg00000905 0.159203102
cg00000924 0.402537088
cg00000948 0.899170362

Total number of rows: 485005

Table truncated, full table size 10835 Kbytes.

Supplementary file Size Download File type/resource
GSM1606974_9445229167_R06C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1606974_9445229167_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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