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Sample GSM1606972 Query DataSets for GSM1606972
Status Public on May 19, 2015
Title AOCS_175
Sample type genomic
Source name Fallopian Tube Cells
Organism Homo sapiens
Characteristics gender: Female
tissue: Fallopian Tube
cell type: normal
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.296696536
cg00000108 0.857021666
cg00000109 0.815207481
cg00000165 0.385339004
cg00000236 0.72550896
cg00000289 0.434580122
cg00000292 0.698534441
cg00000321 0.405506531
cg00000363 0.171038205
cg00000622 0.019616025
cg00000658 0.820613875
cg00000714 0.076035499
cg00000721 0.866022816
cg00000734 0.073536157
cg00000769 0.033527485
cg00000807 0.887641923
cg00000884 0.757970243
cg00000905 0.221850371
cg00000924 0.442309281
cg00000948 0.86928579

Total number of rows: 485005

Table truncated, full table size 10839 Kbytes.

Supplementary file Size Download File type/resource
GSM1606972_9445229167_R04C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1606972_9445229167_R04C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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