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Sample GSM1606970 Query DataSets for GSM1606970
Status Public on May 19, 2015
Title AOCS_173
Sample type genomic
Source name Fallopian Tube Cells
Organism Homo sapiens
Characteristics gender: Female
tissue: Fallopian Tube
cell type: normal
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.20194214
cg00000108 0.929334925
cg00000109 0.820061978
cg00000165 0.248310367
cg00000236 0.901362982
cg00000289 0.502548406
cg00000292 0.779893676
cg00000321 0.435920113
cg00000363 0.110950391
cg00000622 0.013835717
cg00000658 0.808869418
cg00000714 0.152847436
cg00000721 0.895839589
cg00000734 0.072553018
cg00000769 0.039910383
cg00000807 0.857785462
cg00000884 0.823873082
cg00000905 0.098929276
cg00000924 0.535986496
cg00000948 0.839267329

Total number of rows: 485005

Table truncated, full table size 10851 Kbytes.

Supplementary file Size Download File type/resource
GSM1606970_9445229167_R02C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1606970_9445229167_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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