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Sample GSM1606934 Query DataSets for GSM1606934
Status Public on May 19, 2015
Title AOCS_139_ICGC_DBDE_20130729_003
Sample type genomic
Source name TumourMetastasisToDistantLocation
Organism Homo sapiens
Characteristics gender: Female
tissue: TumourMetastasisToDistantLocation
cell type: high grade serous ovarian cancer
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.158022835
cg00000108 0.905924754
cg00000109 0.879569367
cg00000165 0.576846797
cg00000236 0.84684091
cg00000289 0.412945428
cg00000292 0.784437694
cg00000321 0.221444654
cg00000363 0.132848781
cg00000622 0.021544612
cg00000658 0.843539136
cg00000714 0.082096314
cg00000721 0.923412939
cg00000734 0.071454299
cg00000769 0.047932237
cg00000807 0.832475556
cg00000884 0.798883509
cg00000905 0.105110459
cg00000924 0.222109698
cg00000948 0.796986323

Total number of rows: 485005

Table truncated, full table size 10826 Kbytes.

Supplementary file Size Download File type/resource
GSM1606934_9445229078_R06C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1606934_9445229078_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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