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Sample GSM1606933 Query DataSets for GSM1606933
Status Public on May 19, 2015
Title AOCS_139_ICGC_DBDE_20130729_002
Sample type genomic
Source name TumourMetastasisToDistantLocation
Organism Homo sapiens
Characteristics gender: Female
tissue: TumourMetastasisToDistantLocation
cell type: high grade serous ovarian cancer
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.118686513
cg00000108 0.955915336
cg00000109 0.858401058
cg00000165 0.538101508
cg00000236 0.880151571
cg00000289 0.652069073
cg00000292 0.775363981
cg00000321 0.531413169
cg00000363 0.121397515
cg00000622 0.017849922
cg00000658 0.792895224
cg00000714 0.078081284
cg00000721 0.907059743
cg00000734 0.075701429
cg00000769 0.063196029
cg00000807 0.823002556
cg00000884 0.790621427
cg00000905 0.095383669
cg00000924 0.201520768
cg00000948 0.744392574

Total number of rows: 485005

Table truncated, full table size 10843 Kbytes.

Supplementary file Size Download File type/resource
GSM1606933_9445229078_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1606933_9445229078_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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