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Sample GSM1606932 Query DataSets for GSM1606932
Status Public on May 19, 2015
Title AOCS_139_ICGC_DBDE_20130729_001
Sample type genomic
Source name TumourMetastasisToDistantLocation
Organism Homo sapiens
Characteristics gender: Female
tissue: TumourMetastasisToDistantLocation
cell type: high grade serous ovarian cancer
Treatment protocol NA
Growth protocol NA
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh frozen tissues using AllPrep DNA/RNA Mini Kit (Qiagen). Genomic DNA (500ng) was bisulfite converted using EZ DNA methylation Kit (Zimo Research) following the manufacturer’s protocol with modification for Illumina Infinium Methyaltion arrays
Label cy3/cy5
Label protocol Bisulfite converted genomic DNAwas whole genome amplified and labeled using Illumina protocol
Hybridization protocol Samples were hybridized to Infinium Human Methylation 450K BeadChips (Illumina) according to the manufacturer’s protocol.
Scan protocol Arrays were scanned on Iscan (Illumina)
Description Raw data for arrays used for methylation analysis
Data processing Data was background corrected, normalized to internal controls and QC was performed at the probe and sample level. COMBAT was used to remove batch effects (Johnson et al., 2007)
Submission date Feb 10, 2015
Last update date Nov 09, 2022
Contact name Ann-Marie Patch
Organization name QIMR Berghofer Medical Research Institute
Street address 300 Herston Road
City Herston
State/province QLD
ZIP/Postal code 4006
Country Australia
Platform ID GPL13534
Series (2)
GSE65820 Whole genome characterisation of chemoresistant ovarian cancer [Illumina_450K_Methylation]
GSE65821 Whole genome characterisation of chemoresistant ovarian cancer
Reanalyzed by GSE217673

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.219078929
cg00000108 0.911060296
cg00000109 0.892713059
cg00000165 0.35471445
cg00000236 0.859937665
cg00000289 0.574338218
cg00000292 0.854025638
cg00000321 0.235269019
cg00000363 0.192141221
cg00000622 0.032211969
cg00000658 0.823891158
cg00000714 0.123731436
cg00000721 0.901749214
cg00000734 0.071914923
cg00000769 0.029914979
cg00000807 0.848925319
cg00000884 0.819010999
cg00000905 0.138046538
cg00000924 0.281718617
cg00000948 0.874299151

Total number of rows: 485005

Table truncated, full table size 10850 Kbytes.

Supplementary file Size Download File type/resource
GSM1606932_9445229094_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1606932_9445229094_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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