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Sample GSM1588881 Query DataSets for GSM1588881
Status Public on Sep 15, 2015
Title Pt10-DP4
Sample type SRA
 
Source name tumor biopsy
Organism Homo sapiens
Characteristics cell type: melanoma
mapki sensitivity: resistant
mapki treatment: BRAFi
Extracted molecule polyA RNA
Extraction protocol Poly A tail enriching, paired end RNAseq
TruSeq RNA Sample Preparation Kit v2
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description Patient 10 melanoma, post BRAFi resistance, 4th biopsy
Data processing FASTQ files were mapped by Tophat2
Tophat BAMs were quantified and normalized using Cuffnorm, DGE were called by cuffdiff
Genome_build: hg19
Supplementary_files_format_and_content: The normalized expression levels by cuffnorm
 
Submission date Jan 22, 2015
Last update date May 15, 2019
Contact name Willy Hugo
E-mail(s) hwilly@mednet.ucla.edu
Organization name UCLA
Department Medicine
Street address 10833 Le Conte Ave, 52-121 CHS, Division of Dermatology
City Los Angeles
State/province California
ZIP/Postal code 90095
Country USA
 
Platform ID GPL11154
Series (2)
GSE65185 RNAseq changes in pre MAPKi treatment and post MAPKi resistance Melanomas
GSE65186 Non-genomic and Immune Evolution in Melanoma with Acquired MAPKi Resistance
Relations
BioSample SAMN03290901
SRA SRX849811

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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