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Status
Public on Sep 15, 2015
Title
Pt7-DP1.replicate
Sample type
RNA
Source name
tumor biopsy
Organism
Homo sapiens Characteristics
cell type: melanoma
Extracted molecule
total RNA
Extraction protocol
total RNA
Label
biotin
Label protocol
Not provided
Hybridization protocol
Not provided
Scan protocol
Not provided
Description
Patient 7 melanoma, post BRAFi resistance, 1st biopsy, replicate
Data processing
CEL files are loaded using oligo R package. Probe set definition is based on pd.hugene.2.1.st R package. Gene level raw expression values is computed by fitProbeLevelModel function using the 'target=core' argument. Expression values is then RMA normalized.
Submission date
Jan 22, 2015
Last update date
Sep 22, 2015
Contact name
Willy Hugo
E-mail(s)
hwilly@mednet.ucla.edu Organization name
UCLA
Department
Medicine
Street address
10833 Le Conte Ave, 52-121 CHS, Division of Dermatology
City
Los Angeles
State/province
California
ZIP/Postal code
90095
Country
USA
Platform ID
GPL17692 Series (2)
GSE65184 Expression changes in pre MAPKi treatment and post MAPKi resistance Melanomas
GSE65186 Non-genomic and Immune Evolution in Melanoma with Acquired MAPKi Resistance
Data table header descriptions ID_REF VALUE RMA normalized, gene-level expression values
Data table ID_REF VALUE 16657436
4.328179348
16657445
2.955706294
16657450
8.321583642
16657469
6.028416407
16657473
4.025606786
16657480
5.191044163
16657492
4.78709393
16657506
5.49808898
16657509
3.313661465
16657514
5.606669539
16657527
5.116834255
16657529
5.134086421
16657534
5.247182829
16657554
5.424053998
16657572
5.769874024
16657594
6.82207206
16657598
6.565420925
16657647
3.984335251
16657650
4.859122675
16657652
3.199370305
29329 598 Kbytes .Supplementary file Size Download File type/resource GSM1588851_Pt7-DP1-D.ga.CEL.gz
5.3 Mb
(ftp) (http) CEL
Processed data included within Sample table
