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Sample GSM1588850

Query DataSets for GSM1588850

Status

Public on Sep 15, 2015

Title

Pt7-DP1

Sample type

RNA

Source name

tumor biopsy

Organism

Homo sapiens

Characteristics

cell type: melanoma
mapki sensitivity: resistant
mapki treatment: BRAFi

Extracted molecule

total RNA

Extraction protocol

total RNA

Label

biotin

Label protocol

Not provided

Hybridization protocol

Not provided

Scan protocol

Not provided

Description

Patient 7 melanoma, post BRAFi resistance, 1st biopsy

Data processing

CEL files are loaded using oligo R package. Probe set definition is based on pd.hugene.2.1.st R package. Gene level raw expression values is computed by fitProbeLevelModel function using the 'target=core' argument. Expression values is then RMA normalized.
pd.hugene.2.1.st R package

Submission date

Jan 22, 2015

Last update date

Sep 22, 2015

Contact name

Willy Hugo

E-mail(s)

hwilly@mednet.ucla.edu

Organization name

UCLA

Department

Medicine

Street address

10833 Le Conte Ave, 52-121 CHS, Division of Dermatology

City

Los Angeles

State/province

California

ZIP/Postal code

90095

Country

USA

Platform ID

GPL17692

Series (2)

GSE65184	Expression changes in pre MAPKi treatment and post MAPKi resistance Melanomas
GSE65186	Non-genomic and Immune Evolution in Melanoma with Acquired MAPKi Resistance

Data table header descriptions
ID_REF
VALUE	RMA normalized, gene-level expression values

Data table
ID_REF	VALUE
16657436	4.444186251
16657445	3.258077625
16657450	8.371424483
16657469	6.101939619
16657473	4.065528592
16657480	5.552912716
16657492	4.846664321
16657506	5.304627591
16657509	3.426362887
16657514	5.688907283
16657527	5.15840653
16657529	4.8728215
16657534	5.313390398
16657554	5.470297783
16657572	5.754320301
16657594	6.832586476
16657598	6.661736003
16657647	3.91727747
16657650	4.596976085
16657652	3.193785979

Total number of rows: 29329

Table truncated, full table size 598 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1588850_Pt7-DP1.ga.CEL.gz	5.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table