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Status
Public on Sep 15, 2015
Title
Pt7-baseline.replicate
Sample type
RNA
Source name
tumor biopsy
Organism
Homo sapiens Characteristics
cell type: melanoma
Extracted molecule
total RNA
Extraction protocol
total RNA
Label
biotin
Label protocol
Not provided
Hybridization protocol
Not provided
Scan protocol
Not provided
Description
Patient 7 melanoma, pre MAPKi treatment, 1st biopsy, replicate
Data processing
CEL files are loaded using oligo R package. Probe set definition is based on pd.hugene.2.1.st R package. Gene level raw expression values is computed by fitProbeLevelModel function using the 'target=core' argument. Expression values is then RMA normalized.
Submission date
Jan 22, 2015
Last update date
Sep 22, 2015
Contact name
Willy Hugo
E-mail(s)
hwilly@mednet.ucla.edu Organization name
UCLA
Department
Medicine
Street address
10833 Le Conte Ave, 52-121 CHS, Division of Dermatology
City
Los Angeles
State/province
California
ZIP/Postal code
90095
Country
USA
Platform ID
GPL17692 Series (2)
GSE65184 Expression changes in pre MAPKi treatment and post MAPKi resistance Melanomas
GSE65186 Non-genomic and Immune Evolution in Melanoma with Acquired MAPKi Resistance
Data table header descriptions ID_REF VALUE RMA normalized, gene-level expression values
Data table ID_REF VALUE 16657436
4.178397605
16657445
2.767767075
16657450
8.210398604
16657469
6.224214203
16657473
4.185881689
16657480
5.155792786
16657492
4.834925358
16657506
5.549852684
16657509
3.401173471
16657514
5.42212318
16657527
5.162422201
16657529
5.014246222
16657534
5.279931604
16657554
5.695107162
16657572
6.018570988
16657594
6.443424705
16657598
6.157387726
16657647
3.942465938
16657650
4.781080295
16657652
3.042291356
29329 598 Kbytes .Supplementary file Size Download File type/resource GSM1588849_Pt7-BASELINE-D.ga.CEL.gz
5.1 Mb
(ftp) (http) CEL
Processed data included within Sample table
