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Sample GSM1582574 Query DataSets for GSM1582574
Status Public on Jan 01, 2017
Title 621
Sample type SRA
Source name foreskin fibroblasts HNF
Organism Homo sapiens
Characteristics cell type: fibroblast
replicate: 3
Extracted molecule total RNA
Extraction protocol Trizol
TruSeq RNA Sample Preparation Kit v2
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
Description human foreskin fibroblasts, replicate 3
Data processing HiSeq 1500 (Illumina), >Q30
casava v1.8.4, default
TopHat2 v2.0.13, default
PGS v6.6 floored: min value=1, filtered: ignore values <10 in all cell types
Genome_build: hg19
Supplementary_files_format_and_content: csv; flored and filtered DESeq expression values
Submission date Jan 12, 2015
Last update date May 15, 2019
Contact name Joachim Schultze
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
Platform ID GPL18460
Series (1)
GSE64882 Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor
BioSample SAMN03281278
SRA SRX838340

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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