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Sample GSM1582573 Query DataSets for GSM1582573
Status Public on Jan 01, 2017
Title 620
Sample type SRA
 
Source name foreskin fibroblasts HNF
Organism Homo sapiens
Characteristics cell type: fibroblast
replicate: 2
Extracted molecule total RNA
Extraction protocol Trizol
TruSeq RNA Sample Preparation Kit v2
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
 
Description human foreskin fibroblasts, replicate 2
Data processing HiSeq 1500 (Illumina), >Q30
casava v1.8.4, default
TopHat2 v2.0.13, default
DESeq
PGS v6.6 floored: min value=1, filtered: ignore values <10 in all cell types
Genome_build: hg19
Supplementary_files_format_and_content: csv; flored and filtered DESeq expression values
 
Submission date Jan 12, 2015
Last update date May 15, 2019
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL18460
Series (1)
GSE64882 Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor
Relations
BioSample SAMN03281226
SRA SRX838339

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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