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Sample GSM1573095 Query DataSets for GSM1573095
Status Public on Jun 03, 2015
Title Frontal of subject 351 (Sample255)
Sample type genomic
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 351
Sex: M
predicted gender: male
age: 82
dna methylation age: 60.1746286643431
age acceleration with respect to noncerebellar samples: -4.13258683143614
cor sample vs gold standard: 0.885657583448858
mean abs difference sample vs gold standard: 0.0859031753253849
postmortem interval: 17
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4616381
cg00000108 0.8617933
cg00000109 0.6299448
cg00000165 0.2124052
cg00000236 0.7910856
cg00000289 0.3961334
cg00000292 0.6620462
cg00000321 0.4829941
cg00000363 0.1566477
cg00000622 0.02074531
cg00000658 0.7835922
cg00000714 0.1037299
cg00000721 0.8630605
cg00000734 0.04940659
cg00000769 0.04023352
cg00000807 0.8848455
cg00000884 0.7589797
cg00000905 0.09349075
cg00000924 0.6565334
cg00000948 0.903345

Total number of rows: 485577

Table truncated, full table size 10035 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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