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Sample GSM1573094 Query DataSets for GSM1573094
Status Public on Jun 03, 2015
Title Frontal of subject 283 (Sample254)
Sample type genomic
 
Source name Brain Frontal
Organism Homo sapiens
Characteristics tissue: Brain Frontal
subject id: 283
Sex: M
predicted gender: male
age: 32
dna methylation age: 27.8432748617755
age acceleration with respect to noncerebellar samples: -3.68827866305123
cor sample vs gold standard: 0.892268948446733
mean abs difference sample vs gold standard: 0.08223614748796
postmortem interval: 13
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4118896
cg00000108 0.8590275
cg00000109 0.6034836
cg00000165 0.1589404
cg00000236 0.7041284
cg00000289 0.3253748
cg00000292 0.7302389
cg00000321 0.371798
cg00000363 0.1120147
cg00000622 0.01846299
cg00000658 0.7810116
cg00000714 0.09770463
cg00000721 0.7808765
cg00000734 0.05474287
cg00000769 0.04014736
cg00000807 0.8980737
cg00000884 0.7462173
cg00000905 0.1149921
cg00000924 0.6026884
cg00000948 0.8899391

Total number of rows: 485577

Table truncated, full table size 10037 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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