NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1573093 Query DataSets for GSM1573093
Status Public on Jun 03, 2015
Title Visual Cortex of subject 315 (Sample253)
Sample type genomic
 
Source name Brain Visual Cortex
Organism Homo sapiens
Characteristics tissue: Brain Visual Cortex
subject id: 315
Sex: F
predicted gender: female
age: 63
dna methylation age: 45.5033296625739
age acceleration with respect to noncerebellar samples: -6.3491342842434
cor sample vs gold standard: 0.884978407945764
mean abs difference sample vs gold standard: 0.0853706292988885
postmortem interval: 16
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.5031427
cg00000108 0.8778327
cg00000109 0.6847385
cg00000165 0.1412742
cg00000236 0.8495727
cg00000289 0.4977949
cg00000292 0.692237
cg00000321 0.5093873
cg00000363 0.1393189
cg00000622 0.02093608
cg00000658 0.8400339
cg00000714 0.1235519
cg00000721 0.8707129
cg00000734 0.04629473
cg00000769 0.03903461
cg00000807 0.8728743
cg00000884 0.7267955
cg00000905 0.1024579
cg00000924 0.6497021
cg00000948 0.9080424

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap