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Sample GSM1573090 Query DataSets for GSM1573090
Status Public on Jun 03, 2015
Title Temporal of subject 328 (Sample250)
Sample type genomic
 
Source name Brain Temporal
Organism Homo sapiens
Characteristics tissue: Brain Temporal
subject id: 328
Sex: F
predicted gender: female
age: 59
dna methylation age: 47.2213755451408
age acceleration with respect to noncerebellar samples: -2.00903544400029
cor sample vs gold standard: 0.89198899361212
mean abs difference sample vs gold standard: 0.083837771778638
postmortem interval: 20
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
 
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
ID_REF
VALUE Background corrected beta values resulting from BeadStudio

Data table
ID_REF VALUE
cg00000029 0.4668558
cg00000108 0.8888652
cg00000109 0.7101025
cg00000165 0.1614848
cg00000236 0.7713045
cg00000289 0.5059445
cg00000292 0.6464476
cg00000321 0.4970009
cg00000363 0.1569552
cg00000622 0.02668412
cg00000658 0.7886972
cg00000714 0.109431
cg00000721 0.8975993
cg00000734 0.0600402
cg00000769 0.0390108
cg00000807 0.8978987
cg00000884 0.7530428
cg00000905 0.05762503
cg00000924 0.57779
cg00000948 0.9129791

Total number of rows: 485577

Table truncated, full table size 10036 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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