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Sample GSM1573085 Query DataSets for GSM1573085
Status Public on Jun 03, 2015
Title Occipital of subject 225 (Sample245)
Sample type genomic
Source name Brain Occipital
Organism Homo sapiens
Characteristics tissue: Brain Occipital
subject id: 225
Sex: M
predicted gender: male
age: 64
dna methylation age: 53.2748438802845
age acceleration with respect to noncerebellar samples: 0.766866694048154
cor sample vs gold standard: 0.893999859282025
mean abs difference sample vs gold standard: 0.0825711101785595
postmortem interval: 34
Growth protocol DNA extracted from fresh frozen tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 24, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64509 DNA methylation profiles of human brain tissue samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.4195152
cg00000108 0.8081761
cg00000109 0.7031378
cg00000165 0.1476025
cg00000236 0.7415459
cg00000289 0.5217546
cg00000292 0.6624754
cg00000321 0.4321373
cg00000363 0.1359781
cg00000622 0.02140394
cg00000658 0.7772477
cg00000714 0.0973015
cg00000721 0.8663986
cg00000734 0.0430602
cg00000769 0.03576517
cg00000807 0.8947343
cg00000884 0.725863
cg00000905 0.07653593
cg00000924 0.5866047
cg00000948 0.9102205

Total number of rows: 485577

Table truncated, full table size 10041 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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